CANFAR

General Overview
MESA calculations for various conditions are listed and trajectory files can be made from these data. N.B. NuGrid switched to Globus around 2019-2020.

Data Download (Globus)
Globus website is https://www.globus.org/. You have your own account, which is linked to ORCID ID. (name: s*tamu.edu, pw: g*2). Once you log in, find endpoint: astrohub#nugrid, from where you can transfer files to your end point. My endpoint is named "NuGrid" (note account name and this name are different). So search this endpoint name in your collection.

Then you can start transfer data. Note, you have to boot app "Globus Connect Personal". It's installed in my Mac, so you boot it, and then you start transferring files to your Mac and then scp to TAMU servers.

Note, in order to directly transfer files on TAMU server, you need to ask IT to open a specific port, but so far not successful.

2021/2/6, I downloaded Umberto's model files and it's working well in my computation.

N. B.

- You cannot access globus while you are using VPN (e.g., guardia)

- I usually download files on DISKGO (USB). When you use an external HD, note that if it is not read-only on Linux or MAC. I couldn't use some external files in my case, so I just downloaded on USB.

- Use this command to scp files to gac-acqdata server: scp -ro ProxyJump=shuyaota@guardia.tamu.edu M6.000Z0.0010 shuyaota@gac-acqdata.cyclotron.tamu.edu:NuGrid_Data/Canfar. This way, you don't need to scp to guardia first (which has a only 15 GB or less space).

Data Download
CANFAR website is https://www.canfar.net/en/. From "Storage Management", you can search "nugrid", then you go to nugrid "data" storage directory. Many calculated data are found in.

For example, when you go to M25.0Z2.0e-02 directory, you find many useful information. M25.0Z2.0e-02 directory contains .h5 data, and LOG keeps MESA calculation log files, where star.log file will be needed to create trajectory file (using star_log2ppn_trajectory.py).

For downloading file, just click the file, then download begins. (don't use "Download" button (and Download Manager IcedTea, which always give failure in downloading.). Note download is not possible from some web networks (like TAMU).

Trajectory file extraction
run like "python star_log2ppn_trajectory.py ." (assuming star.log file is in the current directory). Then it will give you a trajectory file as output. You can use it for running NuGrid calculation (typically, name it in ppn_frame.input file)

How to make SE HDF5 files from MESA for Canfar?
- Use the code and read the wiki https://github.com/NuGrid/mesa-h5. Basically you download the directory and move some related files to somewhere directed in Mesa. You also need to create h5_profile_columns.list file (see below as an example).

! hdf5_profile_columns.list -- determines the contents of the HDF5 files ! NOTE: profile_columns.list MUST contains any standard MESA profile included here ! NOTE 2: any extra profile column MUST also be included here mass delta_mass radius rho temperature ! convection_indicator dcoeff !yps pressure !eps_grav !eps_nuc